datacatalog.formats.biofab package

Submodules

datacatalog.formats.biofab.convert module

class datacatalog.formats.biofab.convert.Biofab(schemas=[], targetschema=None, options={}, reactor=None)

Bases: datacatalog.formats.converter.Converter

Convert UW-Biofab provenance exports to sample-set schema

FILENAME = 'biofab_provenance'

VERSION = '0.0.1'

convert(input_fp, output_fp=None, verbose=True, config={}, enforce_validation=True)

Do the conversion by running a method in runner.py

datacatalog.formats.biofab.runner module