import sys
from ..converter import Converter, ConversionError, ValidationError
from ...tenancy import Projects
[docs]class Caltech(Converter):
"""Convert Caltech run.xlsx to sample-set schema"""
VERSION = '0.0.1'
FILENAME = 'caltech_samples'
projects = Projects.sync()
PROJECT = projects.BIOCON.tacc_name
TENANT = projects.BIOCON.tenant
[docs] def convert(self, input_fp, output_fp=None, verbose=True, config={}, enforce_validation=True):
"""Do the conversion by running a method in runner.py"""
from .runner import convert_caltech
passed_config = config if config != {} else self.options
return convert_caltech(self.targetschema, self.encoding, input_fp,
verbose=verbose,
config=passed_config,
output_file=output_fp,
enforce_validation=enforce_validation)