datacatalog.formats.transcriptic package

Submodules

datacatalog.formats.transcriptic.convert module

class datacatalog.formats.transcriptic.convert.Transcriptic(schemas=[], targetschema=None, options={}, reactor=None)[source]

Bases: datacatalog.formats.converter.Converter

Convert Transcriptic samples.json to sample-set schema

FILENAME = 'transcriptic_samples'
VERSION = '0.0.1'
convert(input_fp, output_fp=None, verbose=True, config={}, enforce_validation=True)[source]

Do the conversion by running a method in runner.py

datacatalog.formats.transcriptic.runner module