Experiment Analysis¶
This dashboard provides real-time status update of data converge (DC) and precomputed data table (PDT) and links to products for easy lookup.
Data Fields Included¶
- The dashboard populates the following columns for each experiment reference run when data is available:
- experiment_reference, with link to the experiment request GoogleDoc
- protocol
- OvNgt (overnight growth period)
- Recov Lps (recovery loops)
- mtypes, a summary of measurement types included in the uploaded data (P - PLATEREADER, F - FLOW, R - RNASeq, D - DNASeq, C - CFU)
- state, with two possible values: complete - when all associated experiment runs have passed metadata validation, processed by flow ETL and validated if flow data is available; preview - when some experiment runs failed metadata validation or when flow data is available, missed flow ETL or haven’t been validated.
- DC date/time, for when data converge was last run
- upload to DC in hours
- DC output, link to where data converge output can be found
- PDT date/time, for when the last precomputed data table analysis was run
- upload to PDT in hours
- finished analyses, a summary of analyses that have run (GA - growth analysis, PM - perform metrics, FSP - fcs signal prediction, LDP - live dead prediction, WA - wasserstein, DG - Diagnose, OM - omics)
- PDT output, link to where PDT analyses output can be found
- visualization, link to the Escalation site for visualization of analysis results
How to use the dashboard¶
- Use the search widget to search for experiment(s) for a given experiment reference using substring or full text
- Click a column header to sort the records by that column
- Hover the mouse over a link to view the corresponding URL
- Click on the experiment reference link to view the experiment request document
- Click the jupyter link to view content contained in the corresponding folder for DC or PDT